Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015905354.1_cds_XP_016455569.1_49492
CDS Infomation

[gene=LOC107779630] [db_xref=GeneID:107779630] [protein=protein LOW PSII ACCUMULATION 1, chloroplastic-like] [protein_id=XP_016455569.1] [location=join(37137..37367,39225..39328,39624..39759,39926..40157,40305..40462,41107..41295,41523..41623,41820..41916,42179..42253)] [gbkey=CDS]
Sequence

ATGGCCACAGCAACTCTCGCCTCCCACCACCTCCATTTCTGCTTCTCCAAATTTTCAATT
ACTAACAGAAGAAGACAAGTACGGCTAACTTATCCAAACAGAAATCCTCTTTCAATAGTC
TTTTGTTCTTCTTCTACTTCGCCCCCTCCGCCATCAGAAGTCAGTGAACCCAGTACTCCC
ACTGCGGAGTCTTGCGTCAATGTGGGCCTTGACCTCTTTTCTAAAGGACGAGTTAAAGAT
GCTCTTGTGCAGTTTGACACGGCACTTACTTTAGATCCTACCCCTATCGAGTCTCAAGCT
GCTCTTTATAATAAAGCATGCTGCCATGCCTACAGAGGGGAAGGAAAGAAAGCTGCTGAC
TGTTTACGCACTGCTTTGAAAGAGTATAACCTAAAGTTTGGCACAATCCTTAATGATCCG
GATTTGGCTTCCTTCAGAGCATTGCCTGAATTTAAGGAACTACAGGAAGAGGCTAGGTTA
GGAGGGGAAGACGTAGGGTACAGTTTCCGTAGAGACCTTAAGCTCATCAGCGAGGTACAA
GCACCATTTAGGGGGGTCAGAAGATTCTTCTATGTGGCATTTACCGCTGCTGCTGGAATT
TCTACATTTTTCACTATACCCAGGTTAATCCGTGCAATTCAAGGTGGAGAGGGTGCTCCT
GATGTTGGGGAGACTGCAGGAAATGTTGCTATAAATGTCGCCGGTATTGTTGTTTTTGTG
GCTTTGTTTCTTTGGGAGAACAAAAAAGAGGAGGAACAGCTTGCACAAATATCACGTGGT
GAAACACTATCAAGGCTGCCTTTGCGCCTTTCAACTAATAGGATTGTTGAACTCGTCCAG
CTAAGAGACACCGTGAGGCCTGTTATTTTGGCTGGAAAAAAGGAGGCAGTCTCTCTGGCT
ATGAGAAATGCTGAGAGATTCCGCACTGAGCTTCTTAAACGTGGAGTCCTTCTAGTTCCT
GTTATTTGGGGTGAAGGTAGGGAAACAAAAGTAGAGAAGAAAGGTTTTGGTCTTCCTCAA
AAGGCAGCCGCTTCTCTCCCATCCATAGGGGAAGATTTTGACCAAAGAACTCAGTCAATA
ATTGCAAAATCAAAATTGAAGTCAGAGATCCGGTTCAAGGCGGAGGTCGTTTCACCTGCA
GAGTGGGAAAGGTGGATAAGGGATCAACAGAAGTCTGAAGGTGTTACTCCTGGTGAAGAT
GTCTACATTATACTTCGTCTAGATGGTCGTGTTCGACGATCAGGAAAGGGGATGCCTGAC
TGGTCTCAAATTATGAAGGAACTACCTCCAATGGAAGCAATATTAAGCAAGCTAGAAAGA
TAA

Peptide Sequence

PEP ID

XP_016455569.1
PEP Infomation

PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic-like [Nicotiana tabacum]
Sequence

MATATLASHHLHFCFSKFSITNRRRQVRLTYPNRNPLSIVFCSSSTSPPPPSEVSEPSTP
TAESCVNVGLDLFSKGRVKDALVQFDTALTLDPTPIESQAALYNKACCHAYRGEGKKAAD
CLRTALKEYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGYSFRRDLKLISEVQ
APFRGVRRFFYVAFTAAAGISTFFTIPRLIRAIQGGEGAPDVGETAGNVAINVAGIVVFV
ALFLWENKKEEEQLAQISRGETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKEAVSLA
MRNAERFRTELLKRGVLLVPVIWGEGRETKVEKKGFGLPQKAAASLPSIGEDFDQRTQSI
IAKSKLKSEIRFKAEVVSPAEWERWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGKGMPD
WSQIMKELPPMEAILSKLER

Transcript Sequence

Gene sequence data has not been registered.